Detailed information of SNP:
|
SNP ID:
sf0424752387(Gbrowse)
Chromosome: chr04 Position: 24752387 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 83.85% | 16.15% |
| All Indica | 772 | 72.41% | 27.59% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 368 | 69.84% | 30.16% |
| Indica II | 201 | 73.63% | 26.37% |
| Indica Intermediate | 203 | 75.86% | 24.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424752387 | A->G | LOC_Os04g42120(LOC_Os04g42120.1) | INTRON |