Detailed information of SNP:
|
SNP ID:
sf0424771090(Gbrowse)
Chromosome: chr04 Position: 24771090 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 52.96% | 47.04% |
| All Indica | 790 | 89.62% | 10.38% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 47 | 6.38% | 93.62% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 206 | 83.50% | 16.50% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424771090 | A->G | INTERGENIC | None |