Detailed information of SNP:
|
SNP ID:
sf0424777537(Gbrowse)
Chromosome: chr04 Position: 24777537 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 51.87% | 48.13% |
| All Indica | 799 | 89.49% | 10.51% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424777537 | C->T | INTERGENIC | None |