Detailed information of SNP:
|
SNP ID:
sf0424803133(Gbrowse)
Chromosome: chr04 Position: 24803133 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.41% | 45.59% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424803133 | T->C | INTERGENIC | None |