Detailed information of SNP:
|
SNP ID:
sf0424825365(Gbrowse)
Chromosome: chr04 Position: 24825365 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1318 | 84.52% | 15.48% |
| All Indica | 785 | 99.11% | 0.89% |
| All Japonica | 417 | 55.40% | 44.60% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 200 | 98.00% | 2.00% |
| Temperate Japonica | 267 | 34.08% | 65.92% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 84.62% | 15.38% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424825365 | T->C | INTERGENIC | None |