Detailed information of SNP:
|
SNP ID:
sf0424869615(Gbrowse)
Chromosome: chr04 Position: 24869615 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 57.64% | 42.36% |
| All Indica | 795 | 85.79% | 14.21% |
| All Japonica | 497 | 20.93% | 79.07% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 87.40% | 12.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 71.29% | 28.71% |
| Temperate Japonica | 335 | 28.06% | 71.94% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424869615 | T->C | INTERGENIC | None |