Detailed information of SNP:
|
SNP ID:
sf0424910619(Gbrowse)
Chromosome: chr04 Position: 24910619 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1322 | 99.02% | 0.98% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 414 | 97.10% | 2.90% |
| Aus | 60 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 279 | 99.28% | 0.72% |
| Tropical Japonica | 80 | 90.00% | 10.00% |
| Japonica Intermediate | 55 | 96.36% | 3.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424910619 | T->C | INTERGENIC | None |