Detailed information of SNP:
|
SNP ID:
sf0424938709(Gbrowse)
Chromosome: chr04 Position: 24938709 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1348 | 88.95% | 11.05% |
| All Indica | 793 | 99.87% | 0.13% |
| All Japonica | 435 | 68.74% | 31.26% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 99.51% | 0.49% |
| Temperate Japonica | 296 | 57.09% | 42.91% |
| Tropical Japonica | 80 | 98.75% | 1.25% |
| Japonica Intermediate | 59 | 86.44% | 13.56% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424938709 | C->A | LOC_Os04g42460(LOC_Os04g42460.1) | INTRON |