Detailed information of SNP:
|
SNP ID:
sf0424945562(Gbrowse)
Chromosome: chr04 Position: 24945562 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 50.18% | 49.82% |
| All Indica | 797 | 13.93% | 86.07% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 12.27% | 87.73% |
| Indica II | 213 | 2.82% | 97.18% |
| Indica Intermediate | 209 | 28.23% | 71.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424945562 | C->T | LOC_Os04g42470(LOC_Os04g42470.4) | INTRON |
| sf0424945562 | C->T | LOC_Os04g42470(LOC_Os04g42470.3) | INTRON |
| sf0424945562 | C->T | LOC_Os04g42470(LOC_Os04g42470.2) | INTRON |
| sf0424945562 | C->T | LOC_Os04g42470(LOC_Os04g42470.7) | INTRON |
| sf0424945562 | C->T | LOC_Os04g42470(LOC_Os04g42470.8) | INTRON |
| sf0424945562 | C->T | LOC_Os04g42470(LOC_Os04g42470.5) | INTRON |
| sf0424945562 | C->T | LOC_Os04g42470(LOC_Os04g42470.6) | INTRON |
| sf0424945562 | C->T | LOC_Os04g42470(LOC_Os04g42470.1) | INTRON |