Detailed information of SNP:
|
SNP ID:
sf0425067966(Gbrowse)
Chromosome: chr04 Position: 25067966 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 58.11% | 41.89% |
| All Indica | 792 | 31.06% | 68.94% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 372 | 25.27% | 74.73% |
| Indica II | 212 | 19.81% | 80.19% |
| Indica Intermediate | 208 | 52.88% | 47.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0425067966 | T->G | LOC_Os04g42690(LOC_Os04g42690.1) | UTR_5_PRIME |