Detailed information of SNP:
|
SNP ID:
sf0425104876(Gbrowse)
Chromosome: chr04 Position: 25104876 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 77.90% | 22.10% |
| All Indica | 792 | 93.06% | 6.94% |
| All Japonica | 421 | 45.84% | 54.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 91.13% | 8.87% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 270 | 61.85% | 38.15% |
| Tropical Japonica | 90 | 7.78% | 92.22% |
| Japonica Intermediate | 61 | 31.15% | 68.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0425104876 | G->A | LOC_Os04g42730(LOC_Os04g42730.1) | INTRON |