Detailed information of SNP:
|
SNP ID:
sf0425119028(Gbrowse)
Chromosome: chr04 Position: 25119028 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 62.42% | 37.58% |
| All Indica | 798 | 92.73% | 7.27% |
| All Japonica | 492 | 7.72% | 92.28% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 333 | 3.60% | 96.40% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 65 | 16.92% | 83.08% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0425119028 | T->C | LOC_Os04g42750(LOC_Os04g42750.1) | INTRON |