Detailed information of SNP:
|
SNP ID:
sf0425237151(Gbrowse)
Chromosome: chr04 Position: 25237151 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1293 | 55.22% | 44.78% |
| All Indica | 767 | 84.75% | 15.25% |
| All Japonica | 408 | 6.13% | 93.87% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 352 | 80.97% | 19.03% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 202 | 79.70% | 20.30% |
| Temperate Japonica | 295 | 4.07% | 95.93% |
| Tropical Japonica | 67 | 8.96% | 91.04% |
| Japonica Intermediate | 46 | 15.22% | 84.78% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0425237151 | G->A | INTERGENIC | None |