Detailed information of SNP:
|
SNP ID:
sf0425309256(Gbrowse)
Chromosome: chr04 Position: 25309256 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1285 | 82.41% | 17.59% |
| All Indica | 765 | 92.94% | 7.06% |
| All Japonica | 401 | 59.35% | 40.65% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 355 | 90.70% | 9.30% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 199 | 89.45% | 10.55% |
| Temperate Japonica | 260 | 75.38% | 24.62% |
| Tropical Japonica | 86 | 17.44% | 82.56% |
| Japonica Intermediate | 55 | 49.09% | 50.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0425309256 | G->A | INTERGENIC | None |