Detailed information of SNP:
|
SNP ID:
sf0425367089(Gbrowse)
Chromosome: chr04 Position: 25367089 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1327 | 81.31% | 18.69% |
| All Indica | 790 | 89.75% | 10.25% |
| All Japonica | 415 | 62.17% | 37.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 85.37% | 14.63% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 87.02% | 12.98% |
| Temperate Japonica | 281 | 77.22% | 22.78% |
| Tropical Japonica | 77 | 14.29% | 85.71% |
| Japonica Intermediate | 57 | 52.63% | 47.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0425367089 | A->T | LOC_Os04g43164(LOC_Os04g43164.2) | INTRON |
| sf0425367089 | A->T | LOC_Os04g43164(LOC_Os04g43164.1) | INTRON |