Detailed information of SNP:
|
SNP ID:
sf0425372636(Gbrowse)
Chromosome: chr04 Position: 25372636 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 73.10% | 26.90% |
| All Indica | 785 | 92.87% | 7.13% |
| All Japonica | 491 | 38.70% | 61.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 91.83% | 8.17% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 87.50% | 12.50% |
| Temperate Japonica | 331 | 34.74% | 65.26% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 67 | 50.75% | 49.25% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0425372636 | T->C | INTERGENIC | None |