Detailed information of SNP:
|
SNP ID:
sf0425676761(Gbrowse)
Chromosome: chr04 Position: 25676761 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 61.76% | 38.24% |
| All Indica | 792 | 74.87% | 25.13% |
| All Japonica | 486 | 35.80% | 64.20% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 370 | 73.51% | 26.49% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 332 | 35.84% | 64.16% |
| Tropical Japonica | 86 | 22.09% | 77.91% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0425676761 | T->C | LOC_Os04g43700(LOC_Os04g43700.1) | INTRON |