Detailed information of SNP:
|
SNP ID:
sf0425736105(Gbrowse)
Chromosome: chr04 Position: 25736105 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 87.70% | 12.30% |
| All Indica | 785 | 99.62% | 0.38% |
| All Japonica | 483 | 66.87% | 33.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 99.46% | 0.54% |
| Indica II | 209 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 323 | 52.94% | 47.06% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0425736105 | T->C | LOC_Os04g43780(LOC_Os04g43780.1) | Non-Synonymous SNP |