Detailed information of SNP:
|
SNP ID:
sf0425758992(Gbrowse)
Chromosome: chr04 Position: 25758992 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1195 | 84.60% | 15.40% |
| All Indica | 673 | 98.22% | 1.78% |
| All Japonica | 411 | 60.58% | 39.42% |
| Aus | 60 | 96.67% | 3.33% |
| Indica I | 313 | 98.72% | 1.28% |
| Indica II | 171 | 100.00% | 0.00% |
| Indica Intermediate | 189 | 95.77% | 4.23% |
| Temperate Japonica | 282 | 47.16% | 52.84% |
| Tropical Japonica | 73 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 76.79% | 23.21% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0425758992 | G->A | INTERGENIC | None |