Detailed information of SNP:
|
SNP ID:
sf0425810464(Gbrowse)
Chromosome: chr04 Position: 25810464 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1238 | 67.21% | 32.79% |
| All Indica | 670 | 70.45% | 29.55% |
| All Japonica | 462 | 60.39% | 39.61% |
| Aus | 55 | 87.27% | 12.73% |
| Indica I | 279 | 65.59% | 34.41% |
| Indica II | 200 | 74.00% | 26.00% |
| Indica Intermediate | 191 | 73.82% | 26.18% |
| Temperate Japonica | 302 | 50.99% | 49.01% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0425810464 | T->A | INTERGENIC | None |