Detailed information of SNP:
|
SNP ID:
sf0426093727(Gbrowse)
Chromosome: chr04 Position: 26093727 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1323 | 84.13% | 15.87% |
| All Indica | 732 | 72.68% | 27.32% |
| All Japonica | 476 | 98.95% | 1.05% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 342 | 94.44% | 5.56% |
| Indica II | 193 | 38.34% | 61.66% |
| Indica Intermediate | 197 | 68.53% | 31.47% |
| Temperate Japonica | 324 | 99.38% | 0.62% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0426093727 | A->G | LOC_Os04g44390(LOC_Os04g44390.1) | Non-Synonymous SNP |