Detailed information of SNP:
|
SNP ID:
sf0426286623(Gbrowse)
Chromosome: chr04 Position: 26286623 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1177 | 97.54% | 2.46% |
| All Indica | 648 | 99.23% | 0.77% |
| All Japonica | 414 | 94.69% | 5.31% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 289 | 98.62% | 1.38% |
| Indica II | 193 | 99.48% | 0.52% |
| Indica Intermediate | 166 | 100.00% | 0.00% |
| Temperate Japonica | 275 | 98.18% | 1.82% |
| Tropical Japonica | 82 | 81.71% | 18.29% |
| Japonica Intermediate | 57 | 96.49% | 3.51% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0426286623 | C->T | INTERGENIC | None |