Detailed information of SNP:
|
SNP ID:
sf0426372332(Gbrowse)
Chromosome: chr04 Position: 26372332 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 76.35% | 23.65% |
| All Indica | 761 | 58.34% | 41.66% |
| All Japonica | 487 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 355 | 40.00% | 60.00% |
| Indica II | 200 | 85.50% | 14.50% |
| Indica Intermediate | 206 | 63.59% | 36.41% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0426372332 | C->T | INTERGENIC | None |