Detailed information of SNP:
|
SNP ID:
sf0426479243(Gbrowse)
Chromosome: chr04 Position: 26479243 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 86.55% | 13.45% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 491 | 72.30% | 27.70% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 330 | 62.12% | 37.88% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0426479243 | A->T | INTERGENIC | None |