Detailed information of SNP:
|
SNP ID:
sf0426592060(Gbrowse)
Chromosome: chr04 Position: 26592060 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 89.73% | 10.27% |
| All Indica | 780 | 97.56% | 2.44% |
| All Japonica | 481 | 75.47% | 24.53% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 365 | 96.99% | 3.01% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 204 | 97.06% | 2.94% |
| Temperate Japonica | 328 | 65.85% | 34.15% |
| Tropical Japonica | 88 | 98.86% | 1.14% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0426592060 | T->C | INTERGENIC | None |