Detailed information of SNP:
|
SNP ID:
sf0426781035(Gbrowse)
Chromosome: chr04 Position: 26781035 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 90.67% | 9.33% |
| All Indica | 782 | 99.87% | 0.13% |
| All Japonica | 490 | 74.49% | 25.51% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 100.00% | 0.00% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 99.51% | 0.49% |
| Temperate Japonica | 330 | 64.24% | 35.76% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0426781035 | C->G | LOC_Os04g45580(LOC_Os04g45580.1) | INTRON |