Detailed information of SNP:
|
SNP ID:
sf0426787485(Gbrowse)
Chromosome: chr04 Position: 26787485 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 78.28% | 21.72% |
| All Indica | 778 | 62.21% | 37.79% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 367 | 58.58% | 41.42% |
| Indica II | 205 | 63.41% | 36.59% |
| Indica Intermediate | 206 | 67.48% | 32.52% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0426787485 | G->C | INTERGENIC | None |