Detailed information of SNP:
|
SNP ID:
sf0426859108(Gbrowse)
Chromosome: chr04 Position: 26859108 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1251 | 61.15% | 38.85% |
| All Indica | 714 | 93.00% | 7.00% |
| All Japonica | 423 | 4.02% | 95.98% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 335 | 93.73% | 6.27% |
| Indica II | 188 | 96.81% | 3.19% |
| Indica Intermediate | 191 | 87.96% | 12.04% |
| Temperate Japonica | 286 | 3.85% | 96.15% |
| Tropical Japonica | 81 | 2.47% | 97.53% |
| Japonica Intermediate | 56 | 7.14% | 92.86% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0426859108 | G->C | LOC_Os04g45720(LOC_Os04g45720.1) | UTR_3_PRIME |