Detailed information of SNP:
|
SNP ID:
sf0426899332(Gbrowse)
Chromosome: chr04 Position: 26899332 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 93.84% | 6.16% |
| All Indica | 778 | 98.97% | 1.03% |
| All Japonica | 454 | 84.36% | 15.64% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 365 | 98.63% | 1.37% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 202 | 100.00% | 0.00% |
| Temperate Japonica | 303 | 98.35% | 1.65% |
| Tropical Japonica | 87 | 35.63% | 64.37% |
| Japonica Intermediate | 64 | 84.38% | 15.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0426899332 | G->A | INTERGENIC | None |