Detailed information of SNP:
|
SNP ID:
sf0426935488(Gbrowse)
Chromosome: chr04 Position: 26935488 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1275 | 95.69% | 4.31% |
| All Indica | 786 | 99.87% | 0.13% |
| All Japonica | 371 | 85.98% | 14.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 248 | 80.65% | 19.35% |
| Tropical Japonica | 71 | 100.00% | 0.00% |
| Japonica Intermediate | 52 | 92.31% | 7.69% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0426935488 | C->G | INTERGENIC | None |