Detailed information of SNP:
|
SNP ID:
sf0426955584(Gbrowse)
Chromosome: chr04 Position: 26955584 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.86% | 41.14% |
| All Indica | 797 | 30.87% | 69.13% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 26.47% | 73.53% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0426955584 | T->C | LOC_Os04g45834(LOC_Os04g45834.3) | INTRON |
| sf0426955584 | T->C | LOC_Os04g45834(LOC_Os04g45834.1) | INTRON |