Detailed information of SNP:
SNP ID:
sf0427004581(Gbrowse)
Chromosome: chr04 Position: 27004581 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 96.83% | 3.17% |
All Indica | 798 | 99.37% | 0.63% |
All Japonica | 497 | 92.15% | 7.85% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 212 | 99.06% | 0.94% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 98.21% | 1.79% |
Tropical Japonica | 94 | 71.28% | 28.72% |
Japonica Intermediate | 68 | 91.18% | 8.82% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0427004581 | A->T | INTERGENIC | None |