Detailed information of SNP:
|
SNP ID:
sf0427047841(Gbrowse)
Chromosome: chr04 Position: 27047841 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 58.39% | 41.61% |
| All Indica | 795 | 30.31% | 69.69% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 24.66% | 75.34% |
| Indica II | 212 | 19.81% | 80.19% |
| Indica Intermediate | 210 | 50.95% | 49.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427047841 | T->C | INTERGENIC | None |