Detailed information of SNP:
|
SNP ID:
sf0427086558(Gbrowse)
Chromosome: chr04 Position: 27086558 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.69% | 45.31% |
| All Indica | 799 | 29.41% | 70.59% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 24.53% | 75.47% |
| Indica II | 213 | 19.25% | 80.75% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427086558 | G->A | INTERGENIC | None |