Detailed information of SNP:
|
SNP ID:
sf0427089015(Gbrowse)
Chromosome: chr04 Position: 27089015 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 93.49% | 6.51% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 478 | 82.43% | 17.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 322 | 76.09% | 23.91% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427089015 | T->C | INTERGENIC | None |