Detailed information of SNP:
|
SNP ID:
sf0427105080(Gbrowse)
Chromosome: chr04 Position: 27105080 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1353 | 70.95% | 29.05% |
| All Indica | 781 | 94.75% | 5.25% |
| All Japonica | 453 | 24.28% | 75.72% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 95.14% | 4.86% |
| Indica II | 207 | 99.52% | 0.48% |
| Indica Intermediate | 204 | 89.22% | 10.78% |
| Temperate Japonica | 302 | 9.93% | 90.07% |
| Tropical Japonica | 86 | 59.30% | 40.70% |
| Japonica Intermediate | 65 | 44.62% | 55.38% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427105080 | G->A | LOC_Os04g46060(LOC_Os04g46060.1) | INTRON |