Detailed information of SNP:
|
SNP ID:
sf0427155012(Gbrowse)
Chromosome: chr04 Position: 27155012 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 97.88% | 2.12% |
| All Indica | 794 | 97.73% | 2.27% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427155012 | G->A | LOC_Os04g46150(LOC_Os04g46150.1) | Non-Synonymous SNP |