Detailed information of SNP:
|
SNP ID:
sf0427182175(Gbrowse)
Chromosome: chr04 Position: 27182175 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 84.54% | 15.46% |
| All Indica | 793 | 80.20% | 19.80% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 20.31% | 79.69% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 208 | 41.35% | 58.65% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427182175 | A->C | INTERGENIC | None |