Detailed information of SNP:
|
SNP ID:
sf0427183212(Gbrowse)
Chromosome: chr04 Position: 27183212 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 83.24% | 16.76% |
| All Indica | 797 | 78.54% | 21.46% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 14.06% | 85.94% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 36.97% | 63.03% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427183212 | C->T | LOC_Os04g46210(LOC_Os04g46210.1) | Non-Synonymous SNP |