Detailed information of SNP:
|
SNP ID:
sf0427183595(Gbrowse)
Chromosome: chr04 Position: 27183595 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 57.18% | 42.82% |
| All Indica | 794 | 27.71% | 72.29% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 26.13% | 73.87% |
| Indica II | 212 | 17.45% | 82.55% |
| Indica Intermediate | 207 | 41.06% | 58.94% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427183595 | T->C | LOC_Os04g46210(LOC_Os04g46210.1) | Non-Synonymous SNP |