Detailed information of SNP:
|
SNP ID:
sf0427195770(Gbrowse)
Chromosome: chr04 Position: 27195770 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 82.73% | 17.27% |
| All Indica | 799 | 77.85% | 22.15% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427195770 | C->T | INTERGENIC | None |