Detailed information of SNP:
|
SNP ID:
sf0427199979(Gbrowse)
Chromosome: chr04 Position: 27199979 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 86.36% | 13.64% |
| All Indica | 797 | 83.19% | 16.81% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 18.46% | 81.54% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427199979 | G->A | INTERGENIC | None |