Detailed information of SNP:
|
SNP ID:
sf0427203329(Gbrowse)
Chromosome: chr04 Position: 27203329 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 97.01% | 2.99% |
| All Indica | 755 | 95.36% | 4.64% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 91.94% | 8.06% |
| Indica I | 368 | 97.01% | 2.99% |
| Indica II | 183 | 90.71% | 9.29% |
| Indica Intermediate | 204 | 96.57% | 3.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427203329 | G->A | INTERGENIC | None |