Detailed information of SNP:
|
SNP ID:
sf0427205448(Gbrowse)
Chromosome: chr04 Position: 27205448 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 65.19% | 34.81% |
| All Indica | 792 | 92.05% | 7.95% |
| All Japonica | 484 | 18.80% | 81.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 91.64% | 8.36% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 328 | 10.67% | 89.33% |
| Tropical Japonica | 90 | 26.67% | 73.33% |
| Japonica Intermediate | 66 | 48.48% | 51.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427205448 | A->G | INTERGENIC | None |