Detailed information of SNP:
|
SNP ID:
sf0427214893(Gbrowse)
Chromosome: chr04 Position: 27214893 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 96.15% | 3.85% |
| All Indica | 736 | 93.21% | 6.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 333 | 90.39% | 9.61% |
| Indica II | 205 | 95.12% | 4.88% |
| Indica Intermediate | 198 | 95.96% | 4.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427214893 | G->A | INTERGENIC | None |