Detailed information of SNP:
|
SNP ID:
sf0427236343(Gbrowse)
Chromosome: chr04 Position: 27236343 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 92.91% | 7.09% |
| All Indica | 795 | 99.25% | 0.75% |
| All Japonica | 479 | 81.21% | 18.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 89.16% | 10.84% |
| Tropical Japonica | 89 | 71.91% | 28.09% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427236343 | C->T | LOC_Os04g46270(LOC_Os04g46270.1) | INTRON |