Detailed information of SNP:
|
SNP ID:
sf0427254675(Gbrowse)
Chromosome: chr04 Position: 27254675 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 80.37% | 19.63% |
| All Indica | 794 | 97.98% | 2.02% |
| All Japonica | 480 | 47.92% | 52.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 98.11% | 1.89% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 327 | 28.75% | 71.25% |
| Tropical Japonica | 89 | 95.51% | 4.49% |
| Japonica Intermediate | 64 | 79.69% | 20.31% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427254675 | C->G | INTERGENIC | None |