Detailed information of SNP:
|
SNP ID:
sf0427345396(Gbrowse)
Chromosome: chr04 Position: 27345396 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 89.96% | 10.04% |
| All Indica | 765 | 86.14% | 13.86% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 59 | 54.24% | 45.76% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 184 | 56.52% | 43.48% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427345396 | A->G | INTERGENIC | None |