Detailed information of SNP:
|
SNP ID:
sf0427346113(Gbrowse)
Chromosome: chr04 Position: 27346113 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 87.25% | 12.75% |
| All Indica | 794 | 82.75% | 17.25% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 209 | 49.76% | 50.24% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427346113 | C->T | INTERGENIC | None |