Detailed information of SNP:
|
SNP ID:
sf0427416931(Gbrowse)
Chromosome: chr04 Position: 27416931 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 86.11% | 13.89% |
| All Indica | 794 | 80.23% | 19.77% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 48.44% | 51.56% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 208 | 43.27% | 56.73% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427416931 | C->T | INTERGENIC | None |